convenience_scripts

convenience_scripts#

PATATO command line interfaces#

A series of convenience scripts for running the patato package in the command line.

Modules

patato.convenience_scripts.convert_binary_to_hdf5

patato-import-ithera: A script to convert iThera MSOT Data into the PATATO hdf5 format.

patato.convenience_scripts.convert_simpa

patato-convert-simpa: A script to convert simpa HDF5 output into the PATATO hdf5 format.

patato.convenience_scripts.copy_rois

patato.convenience_scripts.data_analysis

patato.convenience_scripts.generate_core

patato.convenience_scripts.import_clinical_data

patato.convenience_scripts.import_ithera_recons

patato.convenience_scripts.print_speeds

patato.convenience_scripts.process_msot

patato-reconstruct: A script to reconstruct all MSOT data files in a folder.

patato.convenience_scripts.rename_scan

patato.convenience_scripts.scan_status

patato.convenience_scripts.split_rois

patato.convenience_scripts.unmix

patato-unmix is a command line tool for unmixing MSOT data.

patato.convenience_scripts.view